Time period of a pendulum is given by:
$
T =2 \pi \sqrt{\frac{ L }{ g }}
$
When the pendulum is taken into a mine, we are going towards earth's centre. As we go deep, the value of gravity decreases as:
$
g ^{\prime}= g \left(1-\frac{ d }{ R }\right)
$
So $g$ decreases, the values of time period increases.
Implies, the pendulum takes more time to complete one full swing. Hence the clock loses time.